MLOC_59485 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.9985419.455817.917.1943
LEAShoots from the seedlings (10 cm shoot stage)28.65327.7621.946724.4958
INF1Young developing inflorescences (5mm)32.769733.859831.373228.5194
INF2Developing inflorescences (1-1.5 cm)34.802438.918635.131241.1501
ROORoots from the seedlings (10 cm shoot stage)10.589520.252216.218625.6515
NODDeveloping tillers at six leaf stage, 3rd internode16.3320.339814.959677.0311
CAR5Developing grain, bracts removed (5 DPA)32.65330.039232.488331.7682
CAR15Developing grain, bracts removed (15 DPA)16.739917.084417.42139.0538



CDS Structure of MLOC_59485






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59485.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59485.1CUST_13985_PI427708080AvailableAvailablecontig_43658 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48820.1 -2 0.0 1370 743/1000 (74%) 13105.m05209 protein DDT, putative, expressed
TAIR PP10 AT5G44180.1 -2 0.0 762 470/959 (49%) Homeodomain-like transcriptional regulator | chr5:17783172-17789872 FORWARD LENGTH=1694