MLOC_5948 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 30.7375 | 31.7267 | 31.8905 | 30.341 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 31.3713 | 16.2395 | 20.5804 | 19.0067 |
| INF1 | Young developing inflorescences (5mm) | 11.7281 | 11.9401 | 13.3919 | 10.1757 |
| INF2 | Developing inflorescences (1-1.5 cm) | 16.2981 | 15.2501 | 20.2895 | 17.638 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 53.6852 | 39.286 | 53.5667 | 49.0914 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 114.387 | 86.1589 | 83.8125 | 255.486 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 32.7956 | 31.3341 | 28.7899 | 28.9818 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 11.2217 | 10.2767 | 10.6768 | 24.3486 |
CDS Structure of MLOC_5948
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5948.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g51480.1 |
+3 |
3e-93 |
303 |
164/242 (68%) |
13106.m05565 protein expressed protein |
| TAIR PP10 |
AT4G28770.1 |
+3 |
7e-34 |
134 |
69/178 (39%) |
Tetraspanin family protein | chr4:14212177-14213518 REVERSE LENGTH=281 |
