- Predicted Gene MLOC_59478
MLOC_59478 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 20.3061 | 24.0068 | 28.6586 | 22.6549 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 24.5364 | 24.0735 | 22.3813 | 19.6255 |
| INF1 | Young developing inflorescences (5mm) | 3.96357 | 2.93312 | 3.19499 | 2.63461 |
| INF2 | Developing inflorescences (1-1.5 cm) | 3.33048 | 3.42228 | 3.04122 | 3.40504 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 30.5825 | 34.2075 | 30.9362 | 38.8573 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 37.7922 | 37.4962 | 34.892 | 122.8 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 17.4293 | 17.5749 | 18.6067 | 16.2733 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 14.6939 | 14.1805 | 14.4452 | 29.8938 |
CDS Structure of MLOC_59478
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59478.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os12g40490.1 |
+3 |
0.0 |
820 |
409/489 (84%) |
13112.m04208 protein LIM domain-containing protein, putative, expressed |
| TAIR PP10 |
AT4G36860.1 |
+3 |
0.0 |
558 |
294/451 (65%) |
LIM domain-containing protein | chr4:17358580-17361189 REVERSE LENGTH=553 |
