MLOC_59475 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains244.529184.409191.562206.621
LEAShoots from the seedlings (10 cm shoot stage)138.50893.4049143.80499.2414
INF1Young developing inflorescences (5mm)79.797285.314484.088674.2766
INF2Developing inflorescences (1-1.5 cm)66.961881.160779.145784.7848
ROORoots from the seedlings (10 cm shoot stage)308.14225.123211.993259.913
NODDeveloping tillers at six leaf stage, 3rd internode220.815230.408224.648581.197
CAR5Developing grain, bracts removed (5 DPA)127.599136.037121.42129.498
CAR15Developing grain, bracts removed (15 DPA)20.842719.191121.139349.788



CDS Structure of MLOC_59475






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59475.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357883NoneNoneNoneNone
MLOC_59475.1CUST_4140_PI427708080AvailableAvailablecontig_43646 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g06890.1 -1 3e-69 219 157/159 (99%) 13111.m00699 protein vacuolar ATP synthase, putative, expressed
TAIR PP10 AT4G34720.1 -1 9e-68 214 156/159 (98%) | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0 complex, subunit C protein | chr4:16568223-16569165 REVERSE LENGTH=164