MLOC_59454 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8594161.0170.8513451.09246
LEAShoots from the seedlings (10 cm shoot stage)0.2798950.7908450.6614930.543764
INF1Young developing inflorescences (5mm)0.2134340.4038380.2235580.302745
INF2Developing inflorescences (1-1.5 cm)0.4159870.4239630.3025580.527783
ROORoots from the seedlings (10 cm shoot stage)2.015911.503581.523662.04102
NODDeveloping tillers at six leaf stage, 3rd internode1.618652.718285.5670110.3004
CAR5Developing grain, bracts removed (5 DPA)0.8135130.4509110.3746130.629377
CAR15Developing grain, bracts removed (15 DPA)0.2351860.2516540.1618270.642539



CDS Structure of MLOC_59454






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59454.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366183NoneNoneNoneNone
MLOC_59454.2CUST_18196_PI427708080AvailableAvailablecontig_43578 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g15230.1 +3 8e-128 395 324/546 (59%) 13103.m01785 protein DUF292 domain containing protein, expressed
TAIR PP10 AT1G13340.1 +3 4e-20 94 51/144 (35%) Regulator of Vps4 activity in the MVB pathway protein | chr1:4569622-4571043 REVERSE LENGTH=409