MLOC_5944 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_5944_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_5944_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0 | 0 | 0.0724628 | 0.059395 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.0850864 | 0 | 0.09677 | 0.0814795 |
INF1 | Young developing inflorescences (5mm) | 0 | 0.0965007 | 0.0539211 | 0.0801116 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.1811 | 0.128464 | 0.0548122 | 0.161795 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.0610274 | 0.142713 | 0.148502 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0362607 | 0.0277857 | 0.0703857 | 0.103253 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.362362 | 0.343357 | 0.204935 | 0.337012 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.657174 | 0.26547 | 0.229458 | 1.06204 |
CDS Structure of MLOC_5944
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5944.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os10g39450.1 |
+2 |
3e-16 |
77 |
33/57 (58%) |
13110.m03614 protein RING-H2 finger protein, putative, expressed |
TAIR PP10 |
AT1G20823.1 |
+2 |
3e-13 |
67 |
26/49 (53%) |
RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197 |