MLOC_5944 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.07246280.059395
LEAShoots from the seedlings (10 cm shoot stage)0.085086400.096770.0814795
INF1Young developing inflorescences (5mm)00.09650070.05392110.0801116
INF2Developing inflorescences (1-1.5 cm)0.18110.1284640.05481220.161795
ROORoots from the seedlings (10 cm shoot stage)00.06102740.1427130.148502
NODDeveloping tillers at six leaf stage, 3rd internode0.03626070.02778570.07038570.103253
CAR5Developing grain, bracts removed (5 DPA)0.3623620.3433570.2049350.337012
CAR15Developing grain, bracts removed (15 DPA)0.6571740.265470.2294581.06204



CDS Structure of MLOC_5944






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5944.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5944.1CUST_13983_PI427708080AvailableAvailablecontig_136897 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39450.1 +2 3e-16 77 33/57 (58%) 13110.m03614 protein RING-H2 finger protein, putative, expressed
TAIR PP10 AT1G20823.1 +2 3e-13 67 26/49 (53%) RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197