MLOC_59424 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.305618.355317.771421.8062
LEAShoots from the seedlings (10 cm shoot stage)16.235310.455610.890111.0966
INF1Young developing inflorescences (5mm)37.274639.873641.232237.6375
INF2Developing inflorescences (1-1.5 cm)53.497850.374556.68865.1325
ROORoots from the seedlings (10 cm shoot stage)30.759325.141231.731235.5418
NODDeveloping tillers at six leaf stage, 3rd internode8.6166413.609523.842552.952
CAR5Developing grain, bracts removed (5 DPA)25.183826.369424.265328.5901
CAR15Developing grain, bracts removed (15 DPA)30.454325.993826.546273.7174



CDS Structure of MLOC_59424






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59424.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361036NoneNoneNoneNone
MLOC_59424.2CUST_4131_PI427708080AvailableAvailablecontig_43573 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53910.1 +2 2e-170 492 290/376 (77%) 13103.m05904 protein tetratricopeptide repeat domain containing protein, expressed
TAIR PP10 AT1G04130.1 +2 7e-117 354 201/371 (54%) | Symbols: TPR2, AtTPR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1073465-1075374 FORWARD LENGTH=360