MLOC_5942 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 13.6151 | 11.1783 | 11.0394 | 10.4705 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 16.2467 | 17.6391 | 16.4046 | 13.3032 |
| INF1 | Young developing inflorescences (5mm) | 8.12883 | 6.13507 | 7.34485 | 5.05142 |
| INF2 | Developing inflorescences (1-1.5 cm) | 6.66765 | 4.63402 | 6.93884 | 5.25505 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 7.57273 | 5.88006 | 6.7742 | 5.69366 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 7.75088 | 12.4151 | 5.8208 | 12.7283 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 11.5581 | 10.5458 | 11.7656 | 10.2752 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 3.7525 | 3.79697 | 3.84285 | 7.70369 |
CDS Structure of MLOC_5942
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5942.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g43050.1 |
-1 |
3e-131 |
410 |
210/234 (90%) |
13110.m04073 protein OsClp11 - Putative Clp protease homologue, expressed |
| TAIR PP10 |
AT5G45390.1 |
-1 |
6e-106 |
340 |
164/217 (76%) |
| Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18396351-18397586 FORWARD LENGTH=292 |
