MLOC_5941 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 28.6085 | 30.1546 | 34.621 | 28.2046 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 26.5322 | 18.3097 | 19.4734 | 17.32 |
| INF1 | Young developing inflorescences (5mm) | 17.2747 | 17.1607 | 17.6986 | 13.4823 |
| INF2 | Developing inflorescences (1-1.5 cm) | 13.4923 | 13.2899 | 15.3687 | 13.9441 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 26.054 | 24.0065 | 24.3458 | 26.5226 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 52.5138 | 23.7568 | 19.7999 | 81.7151 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 18.0498 | 17.7493 | 19.979 | 15.6811 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 8.16348 | 7.97204 | 8.45943 | 16.8709 |
CDS Structure of MLOC_5941
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5941.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g43060.1 |
+3 |
3e-141 |
446 |
279/356 (78%) |
13110.m04074 protein expressed protein |
| TAIR PP10 |
AT4G25030.2 |
+3 |
4e-92 |
306 |
195/351 (56%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12865336-12866638 FORWARD LENGTH=344 |
