MLOC_59407 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains71.126169.918572.802372.1745
LEAShoots from the seedlings (10 cm shoot stage)105.479271.792221.944165.317
INF1Young developing inflorescences (5mm)2.126051.972821.494711.60822
INF2Developing inflorescences (1-1.5 cm)4.515643.730184.078424.41829
ROORoots from the seedlings (10 cm shoot stage)175.575174.444160.102206.035
NODDeveloping tillers at six leaf stage, 3rd internode33.638142.216957.0824139.468
CAR5Developing grain, bracts removed (5 DPA)17.92717.166817.796516.9977
CAR15Developing grain, bracts removed (15 DPA)8.653889.214318.9697820.2713



CDS Structure of MLOC_59407






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59407.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251330.1NoneNoneNoneNone
MLOC_59407.1CUST_4128_PI427708080AvailableAvailablecontig_43560 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g37910.1 +2 0.0 822 402/501 (80%) 13101.m03865 protein vacuolar-processing enzyme precursor, putative, expressed
TAIR PP10 AT4G32940.1 +2 0.0 679 326/490 (67%) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494