MLOC_59389 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.331353.234462.769343.29674
LEAShoots from the seedlings (10 cm shoot stage)1.704753.469594.000392.47571
INF1Young developing inflorescences (5mm)2.055154.027286.87854.22421
INF2Developing inflorescences (1-1.5 cm)0.6004260.3977362.680161.2836
ROORoots from the seedlings (10 cm shoot stage)22.932310.910513.400414.3417
NODDeveloping tillers at six leaf stage, 3rd internode3.360361.137410.9763162.38461
CAR5Developing grain, bracts removed (5 DPA)4.287433.707783.999664.41452
CAR15Developing grain, bracts removed (15 DPA)0.8695291.067940.7284632.55774



CDS Structure of MLOC_59389






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59389.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366406NoneNoneNoneNone
MLOC_59389.2CUST_4125_PI427708080AvailableAvailablecontig_43536 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08320.1 -3 7e-34 129 90/189 (48%) 13103.m00955 protein ZIM domain containing protein, putative, expressed
TAIR PP10 AT1G19180.2 -3 2e-12 66 41/104 (39%) | Symbols: TIFY10A | jasmonate-zim-domain protein 1 | chr1:6622708-6623271 FORWARD LENGTH=187