- Predicted Gene MLOC_59370
MLOC_59370 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 75.2142 | 106.237 | 104.272 | 89.6306 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 468.004 | 850.055 | 614.389 | 505.055 |
INF1 | Young developing inflorescences (5mm) | 39.4193 | 38.4067 | 34.6311 | 29.3303 |
INF2 | Developing inflorescences (1-1.5 cm) | 22.9158 | 26.0554 | 24.7562 | 24.5115 |
ROO | Roots from the seedlings (10 cm shoot stage) | 47.0262 | 75.2334 | 68.8507 | 78.8304 |
NOD | Developing tillers at six leaf stage, 3rd internode | 316.523 | 244.734 | 303.644 | 822.72 |
CAR5 | Developing grain, bracts removed (5 DPA) | 99.9947 | 103.726 | 109.931 | 91.6201 |
CAR15 | Developing grain, bracts removed (15 DPA) | 24.3381 | 25.3618 | 26.7871 | 52.2314 |
CDS Structure of MLOC_59370
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59370.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g52840.1 |
-3 |
0.0 |
915 |
466/498 (94%) |
13103.m05763 protein serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed |
TAIR PP10 |
AT4G37930.1 |
-3 |
0.0 |
860 |
439/500 (88%) |
| Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517 |