MLOC_59370 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains75.2142106.237104.27289.6306
LEAShoots from the seedlings (10 cm shoot stage)468.004850.055614.389505.055
INF1Young developing inflorescences (5mm)39.419338.406734.631129.3303
INF2Developing inflorescences (1-1.5 cm)22.915826.055424.756224.5115
ROORoots from the seedlings (10 cm shoot stage)47.026275.233468.850778.8304
NODDeveloping tillers at six leaf stage, 3rd internode316.523244.734303.644822.72
CAR5Developing grain, bracts removed (5 DPA)99.9947103.726109.93191.6201
CAR15Developing grain, bracts removed (15 DPA)24.338125.361826.787152.2314



CDS Structure of MLOC_59370






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59370.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360127NoneNoneNoneNone
MLOC_59370.2CUST_4121_PI427708080AvailableAvailablecontig_43520 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52840.1 -3 0.0 915 466/498 (94%) 13103.m05763 protein serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
TAIR PP10 AT4G37930.1 -3 0.0 860 439/500 (88%) | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517