MLOC_59358 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2200080.4897140.1983580.367439
LEAShoots from the seedlings (10 cm shoot stage)0.4123090.09505170.1377810.191867
INF1Young developing inflorescences (5mm)0.4689250.4190590.5976950.416798
INF2Developing inflorescences (1-1.5 cm)0.3580450.352810.2259740.357799
ROORoots from the seedlings (10 cm shoot stage)0.2958091.315050.6466691.33597
NODDeveloping tillers at six leaf stage, 3rd internode0.3127550.2035980.09655210.604559
CAR5Developing grain, bracts removed (5 DPA)553.475572.045590.104556.057
CAR15Developing grain, bracts removed (15 DPA)239.005190.017253.945508.646



CDS Structure of MLOC_59358






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59358.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252419.1NoneNoneNoneNone
MLOC_59358.4CUST_4118_PI427708080AvailableAvailablecontig_43511 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42490.2 +2 0.0 1552 754/816 (92%) 13107.m04440 protein sucrose synthase, putative, expressed
TAIR PP10 AT3G43190.1 +2 0.0 1219 594/804 (74%) | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808