MLOC_59333 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3232540.5095850.3226590.468603
LEAShoots from the seedlings (10 cm shoot stage)23.499529.658735.413125.1175
INF1Young developing inflorescences (5mm)0.7804120.555950.47530.568241
INF2Developing inflorescences (1-1.5 cm)0.228550.2931540.2459240.334257
ROORoots from the seedlings (10 cm shoot stage)0.02334180.1138450.0813990.127498
NODDeveloping tillers at six leaf stage, 3rd internode1.403031.514792.525354.93992
CAR5Developing grain, bracts removed (5 DPA)1.356241.488291.62271.70998
CAR15Developing grain, bracts removed (15 DPA)0.421030.4672290.3453461.15288



CDS Structure of MLOC_59333






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59333.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354629NoneNoneNoneNone
MLOC_59333.1CUST_4117_PI427708080AvailableAvailablecontig_43493 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g11054.1 +1 0.0 1682 866/1018 (85%) 13101.m01192 protein phosphoenolpyruvate carboxylase, putative, expressed
TAIR PP10 AT3G14940.1 +1 0.0 1423 709/962 (74%) | Symbols: ATPPC3, PPC3 | phosphoenolpyruvate carboxylase 3 | chr3:5025584-5029476 FORWARD LENGTH=968