MLOC_59332 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.5750615.905315.36413.5334
LEAShoots from the seedlings (10 cm shoot stage)24.642413.871816.786315.9759
INF1Young developing inflorescences (5mm)26.546928.916427.154122.0831
INF2Developing inflorescences (1-1.5 cm)37.651834.571331.505337.4112
ROORoots from the seedlings (10 cm shoot stage)8.6476215.5199.8115116.7198
NODDeveloping tillers at six leaf stage, 3rd internode23.323525.744950.2799.5235
CAR5Developing grain, bracts removed (5 DPA)14.630413.261413.587713.1154
CAR15Developing grain, bracts removed (15 DPA)5.511144.192886.8362911.563



CDS Structure of MLOC_59332






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59332.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59332.2CUST_13971_PI427708080AvailableAvailablecontig_43493 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g11040.1 +1 0.0 1377 886/1375 (64%) 13101.m01191 protein SCAR-like protein 2, putative, expressed
TAIR PP10 AT2G34150.2 +1 2e-56 212 198/739 (27%) | Symbols: WAVE1 | SCAR family protein | chr2:14419432-14423259 REVERSE LENGTH=821