MLOC_59304 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.35166.588455.489834.84936
LEAShoots from the seedlings (10 cm shoot stage)8.331535.500066.166715.43595
INF1Young developing inflorescences (5mm)18.64219.17821.349914.3399
INF2Developing inflorescences (1-1.5 cm)24.344827.830723.259524.7514
ROORoots from the seedlings (10 cm shoot stage)2.897025.800833.913495.70884
NODDeveloping tillers at six leaf stage, 3rd internode4.206866.244528.2627921.2434
CAR5Developing grain, bracts removed (5 DPA)15.869214.553214.555912.6888
CAR15Developing grain, bracts removed (15 DPA)16.748917.486516.660433.0372



CDS Structure of MLOC_59304






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59304.8
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363994NoneNoneNoneNone
MLOC_59304.8CUST_4111_PI427708080AvailableAvailablecontig_43453 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g32100.1 +1 9e-43 170 168/562 (30%) 13108.m03333 protein transposon protein, putative, CACTA, En/Spm sub-class, expressed
TAIR PP10 AT1G60200.1 +1 1e-35 146 85/196 (43%) splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein | chr1:22200882-22205241 REVERSE LENGTH=899