- Predicted Gene MLOC_59304
MLOC_59304 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 3.3516 | 6.58845 | 5.48983 | 4.84936 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 8.33153 | 5.50006 | 6.16671 | 5.43595 |
INF1 | Young developing inflorescences (5mm) | 18.642 | 19.178 | 21.3499 | 14.3399 |
INF2 | Developing inflorescences (1-1.5 cm) | 24.3448 | 27.8307 | 23.2595 | 24.7514 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.89702 | 5.80083 | 3.91349 | 5.70884 |
NOD | Developing tillers at six leaf stage, 3rd internode | 4.20686 | 6.24452 | 8.26279 | 21.2434 |
CAR5 | Developing grain, bracts removed (5 DPA) | 15.8692 | 14.5532 | 14.5559 | 12.6888 |
CAR15 | Developing grain, bracts removed (15 DPA) | 16.7489 | 17.4865 | 16.6604 | 33.0372 |
CDS Structure of MLOC_59304
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59304.8
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g32100.1 |
+1 |
9e-43 |
170 |
168/562 (30%) |
13108.m03333 protein transposon protein, putative, CACTA, En/Spm sub-class, expressed |
TAIR PP10 |
AT1G60200.1 |
+1 |
1e-35 |
146 |
85/196 (43%) |
splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein | chr1:22200882-22205241 REVERSE LENGTH=899 |