MLOC_5926 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1228360.1406540.2072230.170468
LEAShoots from the seedlings (10 cm shoot stage)2.1055.582553.860373.47086
INF1Young developing inflorescences (5mm)0.04278130.01535220.01840970.0231693
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)1.627792.005041.471672.46278
NODDeveloping tillers at six leaf stage, 3rd internode000.01496930.0309249
CAR5Developing grain, bracts removed (5 DPA)0.07885150.1920290.05063940.124417
CAR15Developing grain, bracts removed (15 DPA)0.076270900.04499540.16142



CDS Structure of MLOC_5926






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5926.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5926.3CUST_13958_PI427708080AvailableAvailablecontig_136870 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g17780.1 +1 0.0 1098 548/834 (66%) 13102.m01986 protein ent-kaurene synthase, chloroplast precursor, putative, expressed
TAIR PP10 AT4G02780.1 +1 0.0 703 365/745 (49%) | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802