- Predicted Gene MLOC_59239
MLOC_59239 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_59239_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_59239_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 6.96695 | 5.56593 | 5.43222 | 5.49889 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.93842 | 10.3381 | 10.4335 | 7.44926 |
INF1 | Young developing inflorescences (5mm) | 2.84033 | 3.76583 | 3.20692 | 2.33175 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.13098 | 2.93416 | 3.00856 | 2.5818 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.82618 | 9.48013 | 9.49882 | 9.98793 |
NOD | Developing tillers at six leaf stage, 3rd internode | 12.6505 | 11.5146 | 22.2145 | 41.231 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.42632 | 2.99539 | 3.0694 | 2.71412 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.87742 | 1.71239 | 1.51986 | 3.41858 |
CDS Structure of MLOC_59239
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59239.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os10g31830.1 |
-3 |
2e-97 |
303 |
147/166 (89%) |
13110.m02776 protein ras-related protein, putative, expressed |
TAIR PP10 |
AT5G03530.1 |
-3 |
3e-75 |
243 |
120/165 (73%) |
| Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210 |