MLOC_59239 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.966955.565935.432225.49889
LEAShoots from the seedlings (10 cm shoot stage)7.9384210.338110.43357.44926
INF1Young developing inflorescences (5mm)2.840333.765833.206922.33175
INF2Developing inflorescences (1-1.5 cm)2.130982.934163.008562.5818
ROORoots from the seedlings (10 cm shoot stage)6.826189.480139.498829.98793
NODDeveloping tillers at six leaf stage, 3rd internode12.650511.514622.214541.231
CAR5Developing grain, bracts removed (5 DPA)3.426322.995393.06942.71412
CAR15Developing grain, bracts removed (15 DPA)1.877421.712391.519863.41858



CDS Structure of MLOC_59239






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59239.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369885NoneNoneNoneNone
MLOC_59239.1CUST_331_PI427708083AvailableAvailablecontig_43390 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g31830.1 -3 2e-97 303 147/166 (89%) 13110.m02776 protein ras-related protein, putative, expressed
TAIR PP10 AT5G03530.1 -3 3e-75 243 120/165 (73%) | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210