MLOC_59238 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.734424.828125.013620.2561
LEAShoots from the seedlings (10 cm shoot stage)36.939337.384531.127127.7343
INF1Young developing inflorescences (5mm)16.231416.844817.449312.7339
INF2Developing inflorescences (1-1.5 cm)16.660216.927617.147517.0105
ROORoots from the seedlings (10 cm shoot stage)16.042222.905518.737623.1564
NODDeveloping tillers at six leaf stage, 3rd internode5.919484.137932.88812.1936
CAR5Developing grain, bracts removed (5 DPA)90.0271103.514108.90588.9906
CAR15Developing grain, bracts removed (15 DPA)7.851278.378327.1594716.4651



CDS Structure of MLOC_59238






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59238.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252215.1NoneNoneNoneNone
MLOC_59238.1CUST_4099_PI427708080AvailableAvailablecontig_43390 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g31820.1 +2 0.0 1428 708/845 (84%) 13110.m02775 protein fluG, putative, expressed
TAIR PP10 AT3G53180.1 +2 0.0 1054 529/850 (62%) glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852