MLOC_59226 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.354724.633725.363425.2112
LEAShoots from the seedlings (10 cm shoot stage)52.587684.005981.758763.452
INF1Young developing inflorescences (5mm)16.590315.205516.043713.5402
INF2Developing inflorescences (1-1.5 cm)10.1729.4010415.303712.0998
ROORoots from the seedlings (10 cm shoot stage)48.931768.526564.073482.6888
NODDeveloping tillers at six leaf stage, 3rd internode34.722930.29437.1219106.036
CAR5Developing grain, bracts removed (5 DPA)12.887212.601410.896712.0475
CAR15Developing grain, bracts removed (15 DPA)2.385312.336122.25065.43835



CDS Structure of MLOC_59226






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59226.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360938NoneNoneNoneNone
MLOC_59226.1CUST_4096_PI427708080AvailableAvailablecontig_43377 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g37904.1 +2 2e-165 477 251/284 (88%) 13104.m03629 protein protein phosphatase 2C, putative, expressed
TAIR PP10 AT1G22280.1 +2 2e-123 368 186/283 (66%) | Symbols: PAPP2C | phytochrome-associated protein phosphatase type 2C | chr1:7874236-7875496 FORWARD LENGTH=281