MLOC_59220 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.57844.653138.651148.8747
LEAShoots from the seedlings (10 cm shoot stage)25.155718.690914.039318.586
INF1Young developing inflorescences (5mm)45.060949.482554.529746.0212
INF2Developing inflorescences (1-1.5 cm)33.977337.268432.586742.862
ROORoots from the seedlings (10 cm shoot stage)17.524629.900432.32541.9776
NODDeveloping tillers at six leaf stage, 3rd internode6.217646.4393319.676732.6598
CAR5Developing grain, bracts removed (5 DPA)75.076476.894574.284584.0058
CAR15Developing grain, bracts removed (15 DPA)8.030547.449167.9355319.9108



CDS Structure of MLOC_59220






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59220.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249140.1NoneNoneNoneNone
MLOC_59220.1CUST_18190_PI427708080AvailableAvailablecontig_43373 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g11320.2 +1 0.0 608 326/374 (87%) 13106.m01226 protein peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed
TAIR PP10 AT2G15790.1 +1 2e-167 486 256/356 (72%) | Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361