- Predicted Gene MLOC_59220
MLOC_59220 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_59220_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_59220_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 39.578 | 44.6531 | 38.6511 | 48.8747 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 25.1557 | 18.6909 | 14.0393 | 18.586 |
INF1 | Young developing inflorescences (5mm) | 45.0609 | 49.4825 | 54.5297 | 46.0212 |
INF2 | Developing inflorescences (1-1.5 cm) | 33.9773 | 37.2684 | 32.5867 | 42.862 |
ROO | Roots from the seedlings (10 cm shoot stage) | 17.5246 | 29.9004 | 32.325 | 41.9776 |
NOD | Developing tillers at six leaf stage, 3rd internode | 6.21764 | 6.43933 | 19.6767 | 32.6598 |
CAR5 | Developing grain, bracts removed (5 DPA) | 75.0764 | 76.8945 | 74.2845 | 84.0058 |
CAR15 | Developing grain, bracts removed (15 DPA) | 8.03054 | 7.44916 | 7.93553 | 19.9108 |
CDS Structure of MLOC_59220
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59220.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g11320.2 |
+1 |
0.0 |
608 |
326/374 (87%) |
13106.m01226 protein peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed |
TAIR PP10 |
AT2G15790.1 |
+1 |
2e-167 |
486 |
256/356 (72%) |
| Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361 |