MLOC_59218 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.589635.387945.929234.41566
LEAShoots from the seedlings (10 cm shoot stage)2.959813.903514.75563.00084
INF1Young developing inflorescences (5mm)6.64315.404686.011484.44975
INF2Developing inflorescences (1-1.5 cm)5.597075.036374.617225.04793
ROORoots from the seedlings (10 cm shoot stage)3.063326.142526.041955.96
NODDeveloping tillers at six leaf stage, 3rd internode3.162273.675983.9647411.3831
CAR5Developing grain, bracts removed (5 DPA)4.901795.223485.527144.45275
CAR15Developing grain, bracts removed (15 DPA)3.904043.579563.652637.39797



CDS Structure of MLOC_59218






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59218.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249350.1NoneNoneNoneNone
MLOC_59218.1CUST_4094_PI427708080AvailableAvailablecontig_43369 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g38940.2 -2 5e-154 452 222/387 (57%) 13106.m04035 protein RMD5 homolog A, putative, expressed
TAIR PP10 AT4G37880.1 -2 7e-113 346 175/392 (45%) LisH/CRA/RING-U-box domains-containing protein | chr4:17810183-17811349 FORWARD LENGTH=388