MLOC_59201 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.05454780.1398360.1004980.120823
LEAShoots from the seedlings (10 cm shoot stage)0.3158940.04331210.1194070.150896
INF1Young developing inflorescences (5mm)0.1665290.2265940.2371250.193509
INF2Developing inflorescences (1-1.5 cm)0.2600380.2989580.1543120.295431
ROORoots from the seedlings (10 cm shoot stage)00.08029760.0721020.155125
NODDeveloping tillers at six leaf stage, 3rd internode0.05532120.06219710.02929440.187298
CAR5Developing grain, bracts removed (5 DPA)0.33290.2442660.2982430.299687
CAR15Developing grain, bracts removed (15 DPA)0.2146390.09315580.1573270.389593



CDS Structure of MLOC_59201






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59201.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59201.1CUST_8125_PI427708083AvailableAvailablecontig_43360 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g58270.1 +3 8e-77 206 134/309 (43%) 13103.m06403 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT4G23160.1 +2 1e-11 69 36/71 (51%) | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | chr4:12129485-12134086 FORWARD LENGTH=1262