MLOC_59179 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.665720.028217.163519.4142
LEAShoots from the seedlings (10 cm shoot stage)11.88845.581527.680556.87196
INF1Young developing inflorescences (5mm)36.895242.084338.658333.0352
INF2Developing inflorescences (1-1.5 cm)23.055726.840826.966427.5548
ROORoots from the seedlings (10 cm shoot stage)14.794318.889519.68720.5139
NODDeveloping tillers at six leaf stage, 3rd internode2.886423.943249.1409215.3911
CAR5Developing grain, bracts removed (5 DPA)19.043220.168418.273618.5961
CAR15Developing grain, bracts removed (15 DPA)3.370893.379232.951017.59788



CDS Structure of MLOC_59179






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59179.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251914.1NoneNoneNoneNone
MLOC_59179.1CUST_4090_PI427708080AvailableAvailablecontig_43339 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g30640.1 +1 8e-131 383 206/221 (93%) 13110.m02644 protein translin, putative, expressed
TAIR PP10 AT2G37020.1 +1 1e-100 305 157/214 (73%) Translin family protein | chr2:15546514-15548792 FORWARD LENGTH=308