MLOC_59171 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.334279.949178.6608110.0216
LEAShoots from the seedlings (10 cm shoot stage)11.365313.547810.564811.5748
INF1Young developing inflorescences (5mm)21.413216.533314.320516.489
INF2Developing inflorescences (1-1.5 cm)19.931718.602617.259522.893
ROORoots from the seedlings (10 cm shoot stage)4.7961110.35127.4078913.9651
NODDeveloping tillers at six leaf stage, 3rd internode7.072148.432957.635431.9179
CAR5Developing grain, bracts removed (5 DPA)15.680513.765814.37516.11
CAR15Developing grain, bracts removed (15 DPA)9.585528.700429.0501323.5301



CDS Structure of MLOC_59171






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59171.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250238.1NoneNoneNoneNone
MLOC_59171.1CUST_18189_PI427708080AvailableAvailablecontig_43334 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02680.1 -1 0.0 1449 874/1279 (68%) 13105.m00240 protein nuclear factor related to kappa-B-binding protein, related, putative, expressed
TAIR PP10 AT3G45830.1 -1 9e-133 446 230/322 (71%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink). | chr3:16841277-16845173 FORWARD LENGTH=1298