MLOC_59170 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.8501621.50919.395419.9067
LEAShoots from the seedlings (10 cm shoot stage)16.96983.605933.852977.59881
INF1Young developing inflorescences (5mm)31.44928.960327.341126.0914
INF2Developing inflorescences (1-1.5 cm)31.298336.89434.526140.3737
ROORoots from the seedlings (10 cm shoot stage)3.083699.538357.2182811.7285
NODDeveloping tillers at six leaf stage, 3rd internode14.180314.836412.101753.3242
CAR5Developing grain, bracts removed (5 DPA)21.516422.018823.081123.5465
CAR15Developing grain, bracts removed (15 DPA)3.474392.71244.136727.98821



CDS Structure of MLOC_59170






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59170.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59170.1CUST_13947_PI427708080AvailableAvailablecontig_43334 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02670.3 +3 0.0 1793 937/1087 (86%) 13105.m00238 protein kinesin motor domain containing protein, putative, expressed
TAIR PP10 AT3G45850.2 +3 0.0 1339 704/1098 (64%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058