MLOC_59150 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.280783.299263.603113.30186
LEAShoots from the seedlings (10 cm shoot stage)4.494564.213264.098623.56507
INF1Young developing inflorescences (5mm)8.173037.965018.374246.34865
INF2Developing inflorescences (1-1.5 cm)9.820738.641379.148829.36638
ROORoots from the seedlings (10 cm shoot stage)2.550633.181264.287463.54767
NODDeveloping tillers at six leaf stage, 3rd internode3.803653.69024.489229.40128
CAR5Developing grain, bracts removed (5 DPA)5.423235.828325.746695.0536
CAR15Developing grain, bracts removed (15 DPA)3.207272.913173.557956.87447



CDS Structure of MLOC_59150






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59150.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249436.1NoneNoneNoneNone
AK374323NoneNoneNoneNone
MLOC_59150.3CUST_4085_PI427708080AvailableAvailablecontig_43307 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g30820.1 +2 4e-121 389 196/263 (75%) 13107.m03107 protein zinc finger family protein, putative, expressed
TAIR PP10 AT4G38050.1 -3 3e-39 105 70/117 (60%) Xanthine/uracil permease family protein | chr4:17869529-17872461 REVERSE LENGTH=709