MLOC_59149 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1638.541574.611579.31642.19
LEAShoots from the seedlings (10 cm shoot stage)146.747114.28166.152588.6276
INF1Young developing inflorescences (5mm)166.097168.479142.192147.912
INF2Developing inflorescences (1-1.5 cm)99.2442117.448113.529129.89
ROORoots from the seedlings (10 cm shoot stage)273.432238.201214.78279.098
NODDeveloping tillers at six leaf stage, 3rd internode293.189240.406108.862564.03
CAR5Developing grain, bracts removed (5 DPA)1751.031985.271877.081981.28
CAR15Developing grain, bracts removed (15 DPA)162.812140.056130.403380.864



CDS Structure of MLOC_59149






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59149.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253026.1NoneNoneNoneNone
MLOC_59149.1CUST_18188_PI427708080AvailableAvailablecontig_43306 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48490.2 +1 0.0 525 252/306 (82%) 13107.m05192 protein stress responsive protein, putative, expressed
TAIR PP10 AT2G39050.1 +1 6e-59 202 91/148 (61%) hydroxyproline-rich glycoprotein family protein | chr2:16303427-16305336 FORWARD LENGTH=317