MLOC_59130 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.843427.296323.464220.657
LEAShoots from the seedlings (10 cm shoot stage)18.00017.211178.064499.54184
INF1Young developing inflorescences (5mm)105.367110.30594.021179.6041
INF2Developing inflorescences (1-1.5 cm)59.660365.561355.943362.1692
ROORoots from the seedlings (10 cm shoot stage)4.1742215.195511.653814.5931
NODDeveloping tillers at six leaf stage, 3rd internode0.05256350.1324350.1602140.437837
CAR5Developing grain, bracts removed (5 DPA)18.508717.738620.162516.6896
CAR15Developing grain, bracts removed (15 DPA)3.882372.158373.768126.73005



CDS Structure of MLOC_59130






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59130.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59130.2CUST_13941_PI427708080AvailableAvailablecontig_43291 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g59750.1 -3 6e-97 307 151/171 (88%) 13103.m06561 protein DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative, expressed
TAIR PP10 AT3G10690.1 -3 0.0 1015 500/674 (74%) | Symbols: GYRA | DNA GYRASE A | chr3:3339612-3346243 REVERSE LENGTH=950