MLOC_59078 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.212170.6637080.7819880.804945
LEAShoots from the seedlings (10 cm shoot stage)0.459451.30070.4697130.594284
INF1Young developing inflorescences (5mm)1.37410.9063050.173120.744794
INF2Developing inflorescences (1-1.5 cm)000.04538720.0645123
ROORoots from the seedlings (10 cm shoot stage)1.902482.455610.8904682.43355
NODDeveloping tillers at six leaf stage, 3rd internode6.332533.593621.145877.31022
CAR5Developing grain, bracts removed (5 DPA)0.6508170.1149140.1338570.291931
CAR15Developing grain, bracts removed (15 DPA)0.06335660.1711970.09003730.309989



CDS Structure of MLOC_59078






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59078.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354543NoneNoneNoneNone
MLOC_59078.2CUST_4078_PI427708080AvailableAvailablecontig_43249 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g34790.1 +1 0.0 859 470/542 (87%) 13108.m03641 protein AMP-binding domain containing protein, expressed
TAIR PP10 AT1G51680.1 +1 0.0 650 350/557 (63%) | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA ligase 1 | chr1:19159007-19161464 REVERSE LENGTH=561