MLOC_59073 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04670430.11680600.116688
LEAShoots from the seedlings (10 cm shoot stage)0.1850060.3628746.337581.65012
INF1Young developing inflorescences (5mm)0.06116340.2818090.3765110.208075
INF2Developing inflorescences (1-1.5 cm)0.5392620.2873510.5021150.471545
ROORoots from the seedlings (10 cm shoot stage)0.5291270.09587420.5240650.21216
NODDeveloping tillers at six leaf stage, 3rd internode00.07823940.3230630.513683
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)6.556838.19016.246917.8558



CDS Structure of MLOC_59073






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59073.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359735NoneNoneNoneNone
AK360933NoneNoneNoneNone
MLOC_59073.1CUST_328_PI427708083AvailableAvailablecontig_43244 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g42690.3 -2 2e-14 75 42/104 (40%) 13102.m04736 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT4G27470.1 -2 5e-15 75 45/102 (44%) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243