MLOC_59050 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains408.731353.256385.441373.47
LEAShoots from the seedlings (10 cm shoot stage)138.04855.396849.751968.5321
INF1Young developing inflorescences (5mm)153.508127.31119.239115.742
INF2Developing inflorescences (1-1.5 cm)63.173279.341177.257680.619
ROORoots from the seedlings (10 cm shoot stage)164.786193.468180.011218.879
NODDeveloping tillers at six leaf stage, 3rd internode149.00763.500432.6976196.089
CAR5Developing grain, bracts removed (5 DPA)240.249245.102256.448241.855
CAR15Developing grain, bracts removed (15 DPA)36.795834.79134.886784.6821



CDS Structure of MLOC_59050






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59050.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252534.1NoneNoneNoneNone
MLOC_59050.1CUST_4071_PI427708080AvailableAvailablecontig_43222 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46070.1 -3 0.0 542 307/340 (90%) 13101.m04729 protein lactate/malate dehydrogenase, putative, expressed
TAIR PP10 AT1G53240.1 -3 1e-169 485 280/331 (85%) | Symbols: mMDH1 | Lactate/malate dehydrogenase family protein | chr1:19854966-19856802 REVERSE LENGTH=341