MLOC_59040 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.975740.974944.707538.7358
LEAShoots from the seedlings (10 cm shoot stage)30.968421.672921.183718.3996
INF1Young developing inflorescences (5mm)9.109585.27844.259594.96701
INF2Developing inflorescences (1-1.5 cm)2.715213.271944.37573.23358
ROORoots from the seedlings (10 cm shoot stage)90.023655.373555.110160.4259
NODDeveloping tillers at six leaf stage, 3rd internode166.99999.7543163.551299.15
CAR5Developing grain, bracts removed (5 DPA)63.852558.121361.80352.2473
CAR15Developing grain, bracts removed (15 DPA)9.3857110.31079.1004620.9697



CDS Structure of MLOC_59040






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59040.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248773.1NoneNoneNoneNone
MLOC_59040.1CUST_4070_PI427708080AvailableAvailablecontig_43216 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g06260.1 +3 1e-93 295 173/213 (81%) 13112.m00638 protein harpin-induced protein 1 domain containing protein, expressed
TAIR PP10 AT3G44220.1 +3 3e-48 171 78/144 (54%) Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:15928216-15929645 FORWARD LENGTH=206