MLOC_59032 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.051114.642717.11413.8058
LEAShoots from the seedlings (10 cm shoot stage)10.33466.585128.154456.21187
INF1Young developing inflorescences (5mm)9.679948.8666810.67577.41085
INF2Developing inflorescences (1-1.5 cm)6.544996.473286.286486.32356
ROORoots from the seedlings (10 cm shoot stage)10.45199.6252114.342710.0446
NODDeveloping tillers at six leaf stage, 3rd internode8.714573.38587.6581910.7078
CAR5Developing grain, bracts removed (5 DPA)9.4719.1649710.25488.17208
CAR15Developing grain, bracts removed (15 DPA)4.762393.546523.708338.89552



CDS Structure of MLOC_59032






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59032.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59032.2CUST_12830_PI427708083AvailableAvailablecontig_43204 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38200.1 -2 6e-91 288 142/152 (93%) 13102.m04201 protein dehydrogenase, putative, expressed
TAIR PP10 AT4G35260.1 -2 2e-83 268 129/151 (85%) | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1 | chr4:16774494-16776233 REVERSE LENGTH=367