- Predicted Gene MLOC_59004
MLOC_59004 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.0495669 | 0.0196115 | 0 | 0.0425633 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
INF1 | Young developing inflorescences (5mm) | 0 | 0 | 0 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 0 | 0 | 0 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.017545 | 0.0158727 | 0 | 0.0804797 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.41384 | 1.98592 | 1.51487 | 2.27494 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.192297 | 0.187769 | 0.170726 | 0.498934 |
CDS Structure of MLOC_59004
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_59004.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g54160.2 |
+1 |
3e-92 |
293 |
202/392 (52%) |
13102.m12340 protein AP2 domain containing protein, expressed |
TAIR PP10 |
AT1G53910.3 |
+1 |
3e-27 |
114 |
104/271 (38%) |
| Symbols: RAP2.12 | related to AP2 12 | chr1:20135242-20136581 FORWARD LENGTH=356 |