MLOC_59004 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04956690.019611500.0425633
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.0175450.015872700.0804797
CAR5Developing grain, bracts removed (5 DPA)2.413841.985921.514872.27494
CAR15Developing grain, bracts removed (15 DPA)0.1922970.1877690.1707260.498934



CDS Structure of MLOC_59004






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59004.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_59004.2CUST_13926_PI427708080AvailableAvailablecontig_43191 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54160.2 +1 3e-92 293 202/392 (52%) 13102.m12340 protein AP2 domain containing protein, expressed
TAIR PP10 AT1G53910.3 +1 3e-27 114 104/271 (38%) | Symbols: RAP2.12 | related to AP2 12 | chr1:20135242-20136581 FORWARD LENGTH=356