MLOC_59003 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.479880.73570.718030.763214
LEAShoots from the seedlings (10 cm shoot stage)2.376520.6002150.4090340.868953
INF1Young developing inflorescences (5mm)16.773417.513515.282912.6098
INF2Developing inflorescences (1-1.5 cm)18.714320.873518.102918.8403
ROORoots from the seedlings (10 cm shoot stage)1.149991.795572.441211.50088
NODDeveloping tillers at six leaf stage, 3rd internode3.725533.747882.409597.38684
CAR5Developing grain, bracts removed (5 DPA)5.165046.954866.806415.26067
CAR15Developing grain, bracts removed (15 DPA)0.5272830.3443860.3298510.926899



CDS Structure of MLOC_59003






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_59003.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374794NoneNoneNoneNone
MLOC_59003.1CUST_18182_PI427708080AvailableAvailablecontig_43190 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g47180.1 +3 5e-71 231 122/181 (67%) 13101.m04855 protein 3-5 exonuclease domain-containing protein, putative, expressed
TAIR PP10 AT3G12410.1 +3 2e-23 99 65/194 (34%) Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3946267-3946959 REVERSE LENGTH=230