MLOC_58998 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains65.102666.856163.248466.5987
LEAShoots from the seedlings (10 cm shoot stage)67.993319.093431.817333.4604
INF1Young developing inflorescences (5mm)27.572124.889520.142621.0667
INF2Developing inflorescences (1-1.5 cm)15.603118.711619.909620.4765
ROORoots from the seedlings (10 cm shoot stage)67.143871.90463.687983.1481
NODDeveloping tillers at six leaf stage, 3rd internode297.441228.83138.799643.65
CAR5Developing grain, bracts removed (5 DPA)41.966843.144741.157342.8557
CAR15Developing grain, bracts removed (15 DPA)15.958414.599411.964136.1693



CDS Structure of MLOC_58998






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58998.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249413.1NoneNoneNoneNone
MLOC_58998.1CUST_4063_PI427708080AvailableAvailablecontig_43187 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g47010.1 +3 3e-156 449 233/285 (82%) 13102.m05288 protein secretory carrier-associated membrane protein, putative, expressed
TAIR PP10 AT1G32050.1 +3 5e-121 357 178/277 (64%) SCAMP family protein | chr1:11528616-11530974 FORWARD LENGTH=264