MLOC_58995 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.968972.16932.884542.32914
LEAShoots from the seedlings (10 cm shoot stage)5.649888.513799.645536.10093
INF1Young developing inflorescences (5mm)1.036491.359331.034091.02628
INF2Developing inflorescences (1-1.5 cm)0.8163770.4730320.4902680.692144
ROORoots from the seedlings (10 cm shoot stage)6.935345.870926.853566.67403
NODDeveloping tillers at six leaf stage, 3rd internode11.54458.0060322.496926.6961
CAR5Developing grain, bracts removed (5 DPA)0.1246390.03963490.1209640.109634
CAR15Developing grain, bracts removed (15 DPA)1.046040.3887430.9509821.97537



CDS Structure of MLOC_58995






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58995.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370544NoneNoneNoneNone
MLOC_58995.5CUST_327_PI427708083AvailableAvailablecontig_43183 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g45810.1 +3 8e-52 176 101/189 (53%) 13105.m04872 protein calcineurin B, putative, expressed
TAIR PP10 AT5G24270.2 +3 2e-41 148 84/163 (52%) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222