MLOC_58977 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.52614.510213.019614.4763
LEAShoots from the seedlings (10 cm shoot stage)10.32917.8022110.01018.25296
INF1Young developing inflorescences (5mm)28.437824.196825.272222.2534
INF2Developing inflorescences (1-1.5 cm)22.348125.767226.020927.0855
ROORoots from the seedlings (10 cm shoot stage)9.4486216.986815.009119.4403
NODDeveloping tillers at six leaf stage, 3rd internode5.783595.014867.9454619.3554
CAR5Developing grain, bracts removed (5 DPA)16.274119.155720.301118.2664
CAR15Developing grain, bracts removed (15 DPA)3.680363.22163.440428.32903



CDS Structure of MLOC_58977






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58977.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK377154NoneNoneNoneNone
MLOC_58977.1CUST_4061_PI427708080AvailableAvailablecontig_43176 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43250.1 -2 0.0 591 278/324 (86%) 13101.m04466 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT1G64350.1 -2 8e-135 397 183/320 (57%) | Symbols: SEH1H | Transducin/WD40 repeat-like superfamily protein | chr1:23881582-23883073 FORWARD LENGTH=326