MLOC_58960 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains138.574113.247102.113121.779
LEAShoots from the seedlings (10 cm shoot stage)50.507729.253634.387333.3257
INF1Young developing inflorescences (5mm)160.833153.317155.479134.038
INF2Developing inflorescences (1-1.5 cm)88.9891100.101100.075106.392
ROORoots from the seedlings (10 cm shoot stage)84.5533101.32101.471123.321
NODDeveloping tillers at six leaf stage, 3rd internode3.849164.836315.922322.0104
CAR5Developing grain, bracts removed (5 DPA)130.48139.641138.035135.417
CAR15Developing grain, bracts removed (15 DPA)38.877631.408732.046480.9199



CDS Structure of MLOC_58960






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58960.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357798NoneNoneNoneNone
MLOC_58960.1CUST_4057_PI427708080AvailableAvailablecontig_43156 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67134.1 +3 4e-167 481 265/291 (91%) 13101.m07281 protein ribosomal L18p/L5e family protein, putative, expressed
TAIR PP10 AT3G25520.1 +3 3e-143 419 231/292 (79%) | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal protein L5 | chr3:9269573-9271327 REVERSE LENGTH=301