MLOC_58956 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.172631.099227.96827.7194
LEAShoots from the seedlings (10 cm shoot stage)17.563810.48018.4630910.8432
INF1Young developing inflorescences (5mm)37.549642.69837.362733.1205
INF2Developing inflorescences (1-1.5 cm)37.126836.959433.507639.5559
ROORoots from the seedlings (10 cm shoot stage)13.541419.24919.402623.2649
NODDeveloping tillers at six leaf stage, 3rd internode13.765315.939717.803857.4106
CAR5Developing grain, bracts removed (5 DPA)30.838428.412228.337328.1249
CAR15Developing grain, bracts removed (15 DPA)10.40159.0763210.978422.7158



CDS Structure of MLOC_58956






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58956.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368777NoneNoneNoneNone
MLOC_58956.3CUST_4054_PI427708080AvailableAvailablecontig_43150 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g32530.1 -2 0.0 1678 806/970 (83%) 13105.m03352 protein mannosylglycoprotein endo-beta-mannosidase, putative, expressed
TAIR PP10 AT1G09010.1 -2 0.0 1379 669/964 (69%) glycoside hydrolase family 2 protein | chr1:2895259-2899287 REVERSE LENGTH=944