MLOC_58947 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.949718.221317.565217.8974
LEAShoots from the seedlings (10 cm shoot stage)15.206315.11810.551111.097
INF1Young developing inflorescences (5mm)8.5390610.297610.14538.1179
INF2Developing inflorescences (1-1.5 cm)6.552817.324166.601767.72795
ROORoots from the seedlings (10 cm shoot stage)12.160811.327313.210113.2364
NODDeveloping tillers at six leaf stage, 3rd internode16.599415.400613.874146.6174
CAR5Developing grain, bracts removed (5 DPA)14.849516.127212.464614.4181
CAR15Developing grain, bracts removed (15 DPA)2.093862.221472.146195.14319



CDS Structure of MLOC_58947






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58947.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364140NoneNoneNoneNone
MLOC_58947.1CUST_4052_PI427708080AvailableAvailablecontig_43141 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g36780.3 +1 0.0 771 381/459 (83%) 13110.m03339 protein OsProCP4 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
TAIR PP10 AT4G36195.3 +1 0.0 590 284/448 (63%) Serine carboxypeptidase S28 family protein | chr4:17127202-17129787 FORWARD LENGTH=488