MLOC_58906 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.632732.315492.545352.18123
LEAShoots from the seedlings (10 cm shoot stage)0.286560.09016340.1850790.139134
INF1Young developing inflorescences (5mm)2.756383.08022.992092.3977
INF2Developing inflorescences (1-1.5 cm)1.394483.064392.310782.35961
ROORoots from the seedlings (10 cm shoot stage)1.19081.111971.071341.01643
NODDeveloping tillers at six leaf stage, 3rd internode00.08159290.05073350.265727
CAR5Developing grain, bracts removed (5 DPA)1.640052.098351.507431.61412
CAR15Developing grain, bracts removed (15 DPA)0.0925020.03771860.08784420.174799



CDS Structure of MLOC_58906






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58906.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372555NoneNoneNoneNone
MLOC_58906.1CUST_4042_PI427708080AvailableAvailablecontig_43099 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g56700.1 -2 2e-57 192 159/193 (82%) 13103.m06188 protein expressed protein
TAIR PP10 AT3G12870.1 -2 8e-34 127 108/198 (55%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4094417-4095037 REVERSE LENGTH=206