MLOC_58905 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.12368.093458.121668.57181
LEAShoots from the seedlings (10 cm shoot stage)8.727090.8077911.778443.1231
INF1Young developing inflorescences (5mm)14.246416.397217.781612.745
INF2Developing inflorescences (1-1.5 cm)8.4450713.61457.9554810.6249
ROORoots from the seedlings (10 cm shoot stage)16.16075.040337.391357.26335
NODDeveloping tillers at six leaf stage, 3rd internode1.707282.069971.104525.17026
CAR5Developing grain, bracts removed (5 DPA)4.141084.864024.731294.13822
CAR15Developing grain, bracts removed (15 DPA)1.231820.9186130.7266972.258



CDS Structure of MLOC_58905






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58905.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374897NoneNoneNoneNone
MLOC_58905.1CUST_4041_PI427708080AvailableAvailablecontig_43099 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g56782.1 +2 3e-31 116 55/72 (76%) 13103.m06201 protein hypothetical protein
TAIR PP10 AT1G31335.1 +2 1e-16 76 38/66 (58%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11217117-11217329 REVERSE LENGTH=70