- Predicted Gene MLOC_58905
MLOC_58905 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_58905_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 13.1236 | 8.09345 | 8.12166 | 8.57181 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 8.72709 | 0.807791 | 1.77844 | 3.1231 |
INF1 | Young developing inflorescences (5mm) | 14.2464 | 16.3972 | 17.7816 | 12.745 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.44507 | 13.6145 | 7.95548 | 10.6249 |
ROO | Roots from the seedlings (10 cm shoot stage) | 16.1607 | 5.04033 | 7.39135 | 7.26335 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.70728 | 2.06997 | 1.10452 | 5.17026 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.14108 | 4.86402 | 4.73129 | 4.13822 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.23182 | 0.918613 | 0.726697 | 2.258 |
CDS Structure of MLOC_58905
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_58905.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g56782.1 |
+2 |
3e-31 |
116 |
55/72 (76%) |
13103.m06201 protein hypothetical protein |
TAIR PP10 |
AT1G31335.1 |
+2 |
1e-16 |
76 |
38/66 (58%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11217117-11217329 REVERSE LENGTH=70 |