MLOC_58904 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains348.709253.927265.017280.687
LEAShoots from the seedlings (10 cm shoot stage)95.5687119.058110.42187.7309
INF1Young developing inflorescences (5mm)116.753143.335152.08114.063
INF2Developing inflorescences (1-1.5 cm)101.566113.048113.032116.752
ROORoots from the seedlings (10 cm shoot stage)275.971230.117223.581272.927
NODDeveloping tillers at six leaf stage, 3rd internode148.798114.313142.875347.689
CAR5Developing grain, bracts removed (5 DPA)137.91147.159143.325137.438
CAR15Developing grain, bracts removed (15 DPA)50.073252.342851.5407115.169



CDS Structure of MLOC_58904






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58904.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371749NoneNoneNoneNone
MLOC_58904.1CUST_4040_PI427708080AvailableAvailablecontig_43099 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g56790.1 +1 1e-91 277 137/145 (94%) 13103.m06204 protein actin-depolymerizing factor, putative, expressed
TAIR PP10 AT2G31200.1 +1 1e-66 212 102/137 (74%) | Symbols: ADF6, ATADF6 | actin depolymerizing factor 6 | chr2:13294171-13294948 FORWARD LENGTH=146