MLOC_58901 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.470222.653922.710323.1182
LEAShoots from the seedlings (10 cm shoot stage)36.47198.2693513.46718.0779
INF1Young developing inflorescences (5mm)16.146412.677112.550111.4134
INF2Developing inflorescences (1-1.5 cm)9.9867310.069511.671911.318
ROORoots from the seedlings (10 cm shoot stage)7.4368217.116712.921920.1394
NODDeveloping tillers at six leaf stage, 3rd internode97.888580.783837.3369268.494
CAR5Developing grain, bracts removed (5 DPA)20.314220.12620.627219.8766
CAR15Developing grain, bracts removed (15 DPA)1.482361.027781.907553.08961



CDS Structure of MLOC_58901






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58901.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361749NoneNoneNoneNone
MLOC_58901.1CUST_4039_PI427708080AvailableAvailablecontig_43095 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g36050.1 +2 3e-120 375 239/455 (53%) 13106.m03723 protein expressed protein
TAIR PP10 AT2G22795.1 +2 3e-17 87 94/452 (21%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 799854 Blast hits to 188815 proteins in 4452 species: Archae - 4529; Bacteria - 144236; Metazoa - 287749; Fungi - 87083; Plants - 43826; Viruses - 3662; Other Eukaryotes - 228769 (source: NCBI BLink). | chr2:9697380-9699584 REVERSE LENGTH=734