MLOC_58872 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains245.317165.79193.274170.329
LEAShoots from the seedlings (10 cm shoot stage)234.014320.585285.991195.061
INF1Young developing inflorescences (5mm)0.9139690.2311810.1973960.351643
INF2Developing inflorescences (1-1.5 cm)0.09051360.14980.1217490.110483
ROORoots from the seedlings (10 cm shoot stage)1184.28577.593639.953602.135
NODDeveloping tillers at six leaf stage, 3rd internode169.399171.55643.8295289.968
CAR5Developing grain, bracts removed (5 DPA)104.522111.799107.75594.5253
CAR15Developing grain, bracts removed (15 DPA)13.107515.13749.373430.9181



CDS Structure of MLOC_58872






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58872.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367251NoneNoneNoneNone
MLOC_58872.1CUST_4031_PI427708080AvailableAvailablecontig_43071 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g74450.1 -3 1e-151 439 229/252 (91%) 13101.m08136 protein aquaporin protein, putative, expressed
TAIR PP10 AT4G01470.1 -3 1e-127 377 193/252 (77%) | Symbols: GAMMA-TIP3, TIP1;3, ATTIP1.3 | tonoplast intrinsic protein 1;3 | chr4:625092-625850 REVERSE LENGTH=252