MLOC_58855 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains83.554874.664774.718980.2506
LEAShoots from the seedlings (10 cm shoot stage)178.536124.398161.83131.632
INF1Young developing inflorescences (5mm)53.950635.09441.638138.2367
INF2Developing inflorescences (1-1.5 cm)17.397919.290820.566622.0236
ROORoots from the seedlings (10 cm shoot stage)1.4967612.027119.874814.2989
NODDeveloping tillers at six leaf stage, 3rd internode67.01643.74652.1023137.709
CAR5Developing grain, bracts removed (5 DPA)48.023651.850345.275151.0647
CAR15Developing grain, bracts removed (15 DPA)2.207622.610841.954395.58651



CDS Structure of MLOC_58855






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58855.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356021NoneNoneNoneNone
MLOC_58855.1CUST_4027_PI427708080AvailableAvailablecontig_43057 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g22690.1 +1 2e-57 183 91/135 (67%) 13106.m02439 protein bundle sheath defective protein 2, putative, expressed
TAIR PP10 AT3G47650.1 +1 4e-37 130 60/102 (59%) DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr3:17569576-17570262 FORWARD LENGTH=136