MLOC_58847 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains405.438319.762292.396354.871
LEAShoots from the seedlings (10 cm shoot stage)169.1894.9872114.919106.159
INF1Young developing inflorescences (5mm)460.22447.179519.568443.669
INF2Developing inflorescences (1-1.5 cm)410.09417.249474.357492.312
ROORoots from the seedlings (10 cm shoot stage)339.196354.432431.141418.649
NODDeveloping tillers at six leaf stage, 3rd internode30.099238.8302109.887154.356
CAR5Developing grain, bracts removed (5 DPA)237.854265.754227.665251.738
CAR15Developing grain, bracts removed (15 DPA)44.749540.106444.5598108.088



CDS Structure of MLOC_58847






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58847.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252878.1NoneNoneNoneNone
MLOC_58847.1CUST_4025_PI427708080AvailableAvailablecontig_43048 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g01870.1 -3 1e-115 337 176/189 (93%) 13107.m00106 protein ribosomal protein L13, putative, expressed
TAIR PP10 AT5G48760.2 -3 2e-104 307 160/189 (85%) Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206