MLOC_58842 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains45.907729.612134.103832.2705
LEAShoots from the seedlings (10 cm shoot stage)32.791926.44930.481723.2362
INF1Young developing inflorescences (5mm)52.883258.911463.625542.12
INF2Developing inflorescences (1-1.5 cm)44.27647.289542.862344.0464
ROORoots from the seedlings (10 cm shoot stage)37.649341.636536.675242.4087
NODDeveloping tillers at six leaf stage, 3rd internode26.528827.334636.592485.2506
CAR5Developing grain, bracts removed (5 DPA)31.048433.821934.051427.9796
CAR15Developing grain, bracts removed (15 DPA)12.292912.387713.245524.7721



CDS Structure of MLOC_58842






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58842.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58842.1CUST_8076_PI427708083AvailableAvailablecontig_43045 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g36700.1 -2 0.0 619 389/405 (96%) 13104.m03548 protein proteasome subunit, putative, expressed
TAIR PP10 AT1G29150.1 -2 0.0 542 340/402 (85%) | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:10181240-10182499 FORWARD LENGTH=419